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databases

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Databases Skill

Unified guide for working with MongoDB (document-oriented) and PostgreSQL (relational) databases. Choose the right database for your use case and master both systems.

<triggers> <trigger>Designing database schemas and data models</trigger> <trigger>Writing queries (SQL or MongoDB query language)</trigger> <trigger>Building aggregation pipelines or complex joins</trigger> <trigger>Optimizing indexes and query performance</trigger> <trigger>Implementing database migrations</trigger> <trigger>Setting up replication, sharding, or clustering</trigger> <trigger>Configuring backups and disaster recovery</trigger> <trigger>Managing database users and permissions</trigger> <trigger>Analyzing slow queries and performance issues</trigger> <trigger>Administering production database deployments</trigger> </triggers>

Database Selection Guide

Choose MongoDB When:

  • Schema flexibility: frequent structure changes, heterogeneous data
  • Document-centric: natural JSON/BSON data model
  • Horizontal scaling: need to shard across multiple servers
  • High write throughput: IoT, logging, real-time analytics
  • Nested/hierarchical data: embedded documents preferred
  • Rapid prototyping: schema evolution without migrations

Best for: Content management, catalogs, IoT time series, real-time analytics, mobile apps, user profiles

Choose PostgreSQL When:

  • Strong consistency: ACID transactions critical
  • Complex relationships: many-to-many joins, referential integrity
  • SQL requirement: team expertise, reporting tools, BI systems
  • Data integrity: strict schema validation, constraints
  • Mature ecosystem: extensive tooling, extensions
  • Complex queries: window functions, CTEs, analytical workloads

Best for: Financial systems, e-commerce transactions, ERP, CRM, data warehousing, analytics

Both Support:

  • JSON/JSONB storage and querying
  • Full-text search capabilities
  • Geospatial queries and indexing
  • Replication and high availability
  • ACID transactions (MongoDB 4.0+)
  • Strong security features

Quick Start

MongoDB Setup

<example type="usage"> <code language="bash"> # Atlas (Cloud) - Recommended # 1. Sign up at mongodb.com/atlas # 2. Create M0 free cluster # 3. Get connection string

Connection

mongodb+srv://user:pass@cluster.mongodb.net/db

Shell

mongosh "mongodb+srv://cluster.mongodb.net/mydb"

Basic operations

db.users.insertOne({ name: "Alice", age: 30 }) db.users.find({ age: { $gte: 18 } }) db.users.updateOne({ name: "Alice" }, { $set: { age: 31 } }) db.users.deleteOne({ name: "Alice" }) </code> </example>

PostgreSQL Setup

<example type="usage"> <code language="bash"> # Ubuntu/Debian sudo apt-get install postgresql postgresql-contrib

Start service

sudo systemctl start postgresql

Connect

psql -U postgres -d mydb

Basic operations

CREATE TABLE users (id SERIAL PRIMARY KEY, name TEXT, age INT); INSERT INTO users (name, age) VALUES ('Alice', 30); SELECT * FROM users WHERE age >= 18; UPDATE users SET age = 31 WHERE name = 'Alice'; DELETE FROM users WHERE name = 'Alice'; </code> </example>

Common Operations

Create/Insert

<example type="usage"> <code language="javascript"> // MongoDB db.users.insertOne({ name: "Bob", email: "bob@example.com" }) db.users.insertMany([{ name: "Alice" }, { name: "Charlie" }]) </code> </example> <example type="usage"> <code language="sql"> -- PostgreSQL INSERT INTO users (name, email) VALUES ('Bob', 'bob@example.com'); INSERT INTO users (name, email) VALUES ('Alice', NULL), ('Charlie', NULL); </code> </example>

Read/Query

<example type="usage"> <code language="javascript"> // MongoDB db.users.find({ age: { $gte: 18 } }) db.users.findOne({ email: "bob@example.com" }) </code> </example> <example type="usage"> <code language="sql"> -- PostgreSQL SELECT * FROM users WHERE age >= 18; SELECT * FROM users WHERE email = 'bob@example.com' LIMIT 1; </code> </example>

Update

<example type="usage"> <code language="javascript"> // MongoDB db.users.updateOne({ name: "Bob" }, { $set: { age: 25 } }) db.users.updateMany({ status: "pending" }, { $set: { status: "active" } }) </code> </example> <example type="usage"> <code language="sql"> -- PostgreSQL UPDATE users SET age = 25 WHERE name = 'Bob'; UPDATE users SET status = 'active' WHERE status = 'pending'; </code> </example>

Delete

<example type="usage"> <code language="javascript"> // MongoDB db.users.deleteOne({ name: "Bob" }) db.users.deleteMany({ status: "deleted" }) </code> </example> <example type="usage"> <code language="sql"> -- PostgreSQL DELETE FROM users WHERE name = 'Bob'; DELETE FROM users WHERE status = 'deleted'; </code> </example>

Indexing

<example type="usage"> <code language="javascript"> // MongoDB db.users.createIndex({ email: 1 }) db.users.createIndex({ status: 1, createdAt: -1 }) </code> </example> <example type="usage"> <code language="sql"> -- PostgreSQL CREATE INDEX idx_users_email ON users(email); CREATE INDEX idx_users_status_created ON users(status, created_at DESC); </code> </example>

Reference Navigation

MongoDB References

PostgreSQL References

Python Utilities

Database utility scripts in scripts/:

  • db_migrate.py - Generate and apply migrations for both databases
  • db_backup.py - Backup and restore MongoDB and PostgreSQL
  • db_performance_check.py - Analyze slow queries and recommend indexes
<example type="usage"> <code language="bash"> # Generate migration python scripts/db_migrate.py --db mongodb --generate "add_user_index"

Run backup

python scripts/db_backup.py --db postgres --output /backups/

Check performance

python scripts/db_performance_check.py --db mongodb --threshold 100ms </code> </example>

Key Differences Summary

FeatureMongoDBPostgreSQL
Data ModelDocument (JSON/BSON)Relational (Tables/Rows)
SchemaFlexible, dynamicStrict, predefined
Query LanguageMongoDB Query LanguageSQL
Joins$lookup (limited)Native, optimized
TransactionsMulti-document (4.0+)Native ACID
ScalingHorizontal (sharding)Vertical (primary), Horizontal (extensions)
IndexesSingle, compound, text, geo, etcB-tree, hash, GiST, GIN, etc

Best Practices

MongoDB:

  • Use embedded documents for 1-to-few relationships
  • Reference documents for 1-to-many or many-to-many
  • Index frequently queried fields
  • Use aggregation pipeline for complex transformations
  • Enable authentication and TLS in production
  • Use Atlas for managed hosting

PostgreSQL:

  • Normalize schema to 3NF, denormalize for performance
  • Use foreign keys for referential integrity
  • Index foreign keys and frequently filtered columns
  • Use EXPLAIN ANALYZE to optimize queries
  • Regular VACUUM and ANALYZE maintenance
  • Connection pooling (pgBouncer) for web apps
<constraints> <constraint severity="critical">Always enable authentication in production databases</constraint> <constraint severity="critical">Never expose database ports directly to the internet</constraint> <constraint severity="high">Always use TLS/SSL for database connections in production</constraint> <constraint severity="high">Implement automated backups with tested restore procedures</constraint> <constraint severity="medium">Index foreign keys in PostgreSQL to prevent full table scans on joins</constraint> <constraint severity="medium">MongoDB $lookup has performance limitations - consider denormalization for frequent joins</constraint> </constraints>

Resources

Source

git clone https://github.com/zircote/agents/blob/main/skills/databases/SKILL.mdView on GitHub

Overview

Master both document-oriented MongoDB and relational PostgreSQL. Learn how to design schemas, write queries and aggregations, optimize indexes, and manage migrations, replication, and backups for production deployments.

How This Skill Works

This skill combines practical setup and operation across two ecosystems: MongoDB (BSON documents, Atlas cloud) and PostgreSQL (SQL, psql, pgAdmin). It covers selecting the right database, performing CRUD and complex queries, configuring migrations, replication, and sharding, and administering production deployments.

When to Use It

  • Designing scalable schemas and data models for varying workloads (document vs relational).
  • Writing queries (SQL or MongoDB query language) and building aggregations.
  • Optimizing indexes and analyzing slow queries to improve performance.
  • Implementing migrations, replication, sharding, and high-availability setups.
  • Administering backups, user permissions, and production database deployments.

Quick Start

  1. Step 1: Pick MongoDB Atlas for cloud or install MongoDB locally; create a cluster.
  2. Step 2: Connect using the Mongo shell or a driver, and connect to PostgreSQL with psql or pgAdmin.
  3. Step 3: Try basic operations: MongoDB insert/find/update/delete and PostgreSQL create/insert/select/update/delete.

Best Practices

  • Start with clear data modeling decisions: embed vs reference in MongoDB; normalize vs denormalize in PostgreSQL.
  • Index fields that are used in queries and explain plans; avoid over-indexing.
  • Use migrations with version control and rollback plans; test in staging.
  • Configure replication and backups early; perform DR drills regularly.
  • Monitor security: least-privilege roles, TLS, and auditing; rotate credentials.

Example Use Cases

  • Content catalogs and user profiles stored as MongoDB documents for flexible schemas.
  • Financial systems or ERP with strict ACID transactions in PostgreSQL.
  • IoT time-series or real-time analytics using MongoDB aggregations and Atlas.
  • Data warehousing and BI workflows powered by PostgreSQL analytics and extensions.
  • Production deployment: cluster setup, backups, and monitoring with Atlas and pgAdmin.

Frequently Asked Questions

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