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pytorch-lightning

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PyTorch Lightning

Overview

PyTorch Lightning is a deep learning framework that organizes PyTorch code to eliminate boilerplate while maintaining full flexibility. Automate training workflows, multi-device orchestration, and implement best practices for neural network training and scaling across multiple GPUs/TPUs.

When to Use This Skill

This skill should be used when:

  • Building, training, or deploying neural networks using PyTorch Lightning
  • Organizing PyTorch code into LightningModules
  • Configuring Trainers for multi-GPU/TPU training
  • Implementing data pipelines with LightningDataModules
  • Working with callbacks, logging, and distributed training strategies (DDP, FSDP, DeepSpeed)
  • Structuring deep learning projects professionally

Core Capabilities

1. LightningModule - Model Definition

Organize PyTorch models into six logical sections:

  1. Initialization - __init__() and setup()
  2. Training Loop - training_step(batch, batch_idx)
  3. Validation Loop - validation_step(batch, batch_idx)
  4. Test Loop - test_step(batch, batch_idx)
  5. Prediction - predict_step(batch, batch_idx)
  6. Optimizer Configuration - configure_optimizers()

Quick template reference: See scripts/template_lightning_module.py for a complete boilerplate.

Detailed documentation: Read references/lightning_module.md for comprehensive method documentation, hooks, properties, and best practices.

2. Trainer - Training Automation

The Trainer automates the training loop, device management, gradient operations, and callbacks. Key features:

  • Multi-GPU/TPU support with strategy selection (DDP, FSDP, DeepSpeed)
  • Automatic mixed precision training
  • Gradient accumulation and clipping
  • Checkpointing and early stopping
  • Progress bars and logging

Quick setup reference: See scripts/quick_trainer_setup.py for common Trainer configurations.

Detailed documentation: Read references/trainer.md for all parameters, methods, and configuration options.

3. LightningDataModule - Data Pipeline Organization

Encapsulate all data processing steps in a reusable class:

  1. prepare_data() - Download and process data (single-process)
  2. setup() - Create datasets and apply transforms (per-GPU)
  3. train_dataloader() - Return training DataLoader
  4. val_dataloader() - Return validation DataLoader
  5. test_dataloader() - Return test DataLoader

Quick template reference: See scripts/template_datamodule.py for a complete boilerplate.

Detailed documentation: Read references/data_module.md for method details and usage patterns.

4. Callbacks - Extensible Training Logic

Add custom functionality at specific training hooks without modifying your LightningModule. Built-in callbacks include:

  • ModelCheckpoint - Save best/latest models
  • EarlyStopping - Stop when metrics plateau
  • LearningRateMonitor - Track LR scheduler changes
  • BatchSizeFinder - Auto-determine optimal batch size

Detailed documentation: Read references/callbacks.md for built-in callbacks and custom callback creation.

5. Logging - Experiment Tracking

Integrate with multiple logging platforms:

  • TensorBoard (default)
  • Weights & Biases (WandbLogger)
  • MLflow (MLFlowLogger)
  • Neptune (NeptuneLogger)
  • Comet (CometLogger)
  • CSV (CSVLogger)

Log metrics using self.log("metric_name", value) in any LightningModule method.

Detailed documentation: Read references/logging.md for logger setup and configuration.

6. Distributed Training - Scale to Multiple Devices

Choose the right strategy based on model size:

  • DDP - For models <500M parameters (ResNet, smaller transformers)
  • FSDP - For models 500M+ parameters (large transformers, recommended for Lightning users)
  • DeepSpeed - For cutting-edge features and fine-grained control

Configure with: Trainer(strategy="ddp", accelerator="gpu", devices=4)

Detailed documentation: Read references/distributed_training.md for strategy comparison and configuration.

7. Best Practices

  • Device agnostic code - Use self.device instead of .cuda()
  • Hyperparameter saving - Use self.save_hyperparameters() in __init__()
  • Metric logging - Use self.log() for automatic aggregation across devices
  • Reproducibility - Use seed_everything() and Trainer(deterministic=True)
  • Debugging - Use Trainer(fast_dev_run=True) to test with 1 batch

Detailed documentation: Read references/best_practices.md for common patterns and pitfalls.

Quick Workflow

  1. Define model:

    class MyModel(L.LightningModule):
        def __init__(self):
            super().__init__()
            self.save_hyperparameters()
            self.model = YourNetwork()
    
        def training_step(self, batch, batch_idx):
            x, y = batch
            loss = F.cross_entropy(self.model(x), y)
            self.log("train_loss", loss)
            return loss
    
        def configure_optimizers(self):
            return torch.optim.Adam(self.parameters())
    
  2. Prepare data:

    # Option 1: Direct DataLoaders
    train_loader = DataLoader(train_dataset, batch_size=32)
    
    # Option 2: LightningDataModule (recommended for reusability)
    dm = MyDataModule(batch_size=32)
    
  3. Train:

    trainer = L.Trainer(max_epochs=10, accelerator="gpu", devices=2)
    trainer.fit(model, train_loader)  # or trainer.fit(model, datamodule=dm)
    

Resources

scripts/

Executable Python templates for common PyTorch Lightning patterns:

  • template_lightning_module.py - Complete LightningModule boilerplate
  • template_datamodule.py - Complete LightningDataModule boilerplate
  • quick_trainer_setup.py - Common Trainer configuration examples

references/

Detailed documentation for each PyTorch Lightning component:

  • lightning_module.md - Comprehensive LightningModule guide (methods, hooks, properties)
  • trainer.md - Trainer configuration and parameters
  • data_module.md - LightningDataModule patterns and methods
  • callbacks.md - Built-in and custom callbacks
  • logging.md - Logger integrations and usage
  • distributed_training.md - DDP, FSDP, DeepSpeed comparison and setup
  • best_practices.md - Common patterns, tips, and pitfalls

Source

git clone https://github.com/Microck/ordinary-claude-skills/blob/main/skills_all/claude-scientific-skills/scientific-skills/pytorch-lightning/SKILL.mdView on GitHub

Overview

PyTorch Lightning is a lightweight framework that organizes PyTorch code into LightningModules and Trainers, reducing boilerplate while preserving flexibility. It automates multi-device orchestration and enforces best practices for training and scaling across GPUs and TPUs.

How This Skill Works

Developers implement a LightningModule with defined hooks for initialization, training, validation, testing, prediction, and optimizer configuration. The Trainer then manages the training loop, device placement, precision settings, and distributed strategies such as DDP, FSDP, or DeepSpeed to enable scalable neural network training.

When to Use It

  • You are building neural networks in PyTorch and want a clean, organized module structure that reduces boilerplate.
  • You need to compartmentalize data handling using LightningDataModule with prepare_data, setup, and dataloaders.
  • You require multi-GPU or TPU training and need reliable strategy selection and device management.
  • You want to integrate logging with TensorBoard, Weights & Biases, MLflow, Neptune, or other loggers.
  • You are scaling large models and want appropriate distributed strategies and automatic mixed precision.

Quick Start

  1. Step 1: Implement a LightningModule with initialization, training_step, validation_step, test_step, and configure_optimizers.
  2. Step 2: Create a LightningDataModule to handle prepare_data, setup, and train_dataloader/val_dataloader/test_dataloader.
  3. Step 3: Instantiate a Trainer with the appropriate accelerator, devices, and strategy, then call fit on your model with the data module.

Best Practices

  • Start with a minimal LightningModule and LightningDataModule to establish a clean codebase.
  • Encapsulate all data processing in a LightningDataModule to separate data from model logic.
  • Choose the correct strategy (DDP, FSDP, DeepSpeed) and enable AMP where appropriate.
  • Leverage callbacks like ModelCheckpoint and EarlyStopping for robust training workflows.
  • Log metrics consistently with self.log and configure a logger early in the project.

Example Use Cases

  • Multi-GPU image classification using DDP with automatic mixed precision and a LightningModule that defines training and validation steps.
  • NLP model fine-tuning on TPUs with a LightningDataModule providing tokenized datasets and DataLoaders.
  • Medical imaging segmentation pipeline leveraging LightningDataModule for data transforms and a Callback-based monitoring setup.
  • Hyperparameter search and batch size discovery using BatchSizeFinder and a configurable Trainer.
  • End-to-end experiment tracking with WandBLogger and TensorBoardLogger integrated into the Trainer.

Frequently Asked Questions

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